Welcome to PAQUO

paquo (PAthological QUpath Obsession) is a Python library for interacting with QuPath.

paquo’s goal is to provide a pythonic interface to important features of QuPath, and to make creating and working with QuPath projects intuitive for Python programmers.

We strive to make your lives as easy as possible: If paquo is not pythonic, unintuitive, slow or if its documentation is confusing, it’s a bug in paquo. Feel free to report any issues or feature requests in the issue tracker on github.

This page hosts the documentation for version “0.6.0”.


Paquo is undergoing heavy development right now and things might change frequently. Watch the github repository to stay up to date.